Population Dynamics of Enteric Salmonella in Response to Antibiotic Use in Feedlot Cattle
Abstract
The various uses of antibiotics in feedlot cattle have been a concern as a potential source of
antibiotic resistant Salmonella infections in humans. A 26-day randomized controlled
longitudinal field trial was undertaken to assess the effects of injectable ceftiofur crystalline-free
acid (CCFA) versus in-feed chlortetracycline (CTC) on the temporal dynamics of Salmonella
enterica subsp. enterica in feedlot cattle. Two replicates of 8 pens (total of 176 steers) received
one of 4 different treatment regimens. All, or one, out of 11 steers were treated with CCFA on
day 0 in 8 pens, with half of the pens later receiving three 5-day regimens of CTC. We isolated
Salmonella from fecal samples, and antimicrobial susceptibility was assessed. Salmonella in the
feces were quantified with probe real-time qPCR targeting invA gene and by direct spiral plating
on brilliant green agar. Whole-genome sequencing was performed for all Salmonella isolates to
analyze serotype, resistance genotype, MLST, and to explore the phylogenetic relations of the
isolates.
The mean Salmonella prevalence was 75.0% on day 0, and most isolates were
pansusceptible to 14 antibiotics. Both CCFA and CTC reduced the overall prevalence of
Salmonella; however, these treatments increased the proportion of multi-drug resistant (MDR)
Salmonella. Ceftriaxone and tetracycline resistant Salmonella were detectable in day 0 samples,
suggesting that resistant Salmonella existed in the population before antibiotics use. The quantity
of resistant Salmonella remained at approximately 10^3 CFU / gram of feces throughout the study.
Significantly (P < 0.05) more animals were detected with resistant Salmonella following
antibiotic treatments. Among the six serotypes detected, all S. Reading isolates were MDR and
carrying an IncA/C2 plasmid, suggesting a strong association between serotype and resistance
type. The S. Reading isolates consisted of 2 phylogenetic clades with differential selection by
CCFA versus CTC (alone). Our study demonstrated that the selection pressures of a 3rd
generation cephalosporin and of CTC during the cattle feeding period selects for antibiotic
resistant Salmonella and increases the proportion of cattle carrying resistant Salmonella, even
after the treatment period ends. Further investigations are needed to assess whether an extended
feeding period of 150 days provides a sufficient ‘wash-out’ period for the gut microbiota to
return to normal status.
Subject
Salmonella entericaAntibiotic resistance
Feedlot cattle
Epidemiology
Whole-genome sequencing
Citation
Ohta, Naomi (2018). Population Dynamics of Enteric Salmonella in Response to Antibiotic Use in Feedlot Cattle. Doctoral dissertation, Texas A & M University. Available electronically from https : / /hdl .handle .net /1969 .1 /174130.